J3_6GZX_055

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGCCUUGACAUGCUAGGGAACCC*GGGGUGCCCCGCGAGGGGAGCCCUAGCACAGGUG*CCCUUACGGCC

Length

68 nucleotides

Bulged bases

6GZX|1|A4|C|967, 6GZX|1|A4|G|970, 6GZX|1|A4|A|978, 6GZX|1|A4|G|1002, 6GZX|1|A4|U|1003, 6GZX|1|A4|G|1004, 6GZX|1|A4|C|1007, 6GZX|1|A4|G|1009, 6GZX|1|A4|G|1013, 6GZX|1|A4|G|1014, 6GZX|1|A4|U|1022, 6GZX|1|A4|U|1031, 6GZX|1|A4|C|1195, 6GZX|1|A4|C|1198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A4|G|964
6GZX|1|A4|G|965
6GZX|1|A4|C|966
6GZX|1|A4|C|967
6GZX|1|A4|U|968
6GZX|1|A4|U|969
6GZX|1|A4|G|970
6GZX|1|A4|A|971
6GZX|1|A4|C|972
6GZX|1|A4|A|973
6GZX|1|A4|U|974
6GZX|1|A4|G|975
6GZX|1|A4|C|976
6GZX|1|A4|U|977
6GZX|1|A4|A|978
6GZX|1|A4|G|979
6GZX|1|A4|G|980
6GZX|1|A4|G|981
6GZX|1|A4|A|982
6GZX|1|A4|A|983
6GZX|1|A4|C|984
6GZX|1|A4|C|985
6GZX|1|A4|C|986
*
6GZX|1|A4|G|999
6GZX|1|A4|G|1000
6GZX|1|A4|G|1001
6GZX|1|A4|G|1002
6GZX|1|A4|U|1003
6GZX|1|A4|G|1004
6GZX|1|A4|C|1005
6GZX|1|A4|C|1006
6GZX|1|A4|C|1007
6GZX|1|A4|C|1008
6GZX|1|A4|G|1009
6GZX|1|A4|C|1010
6GZX|1|A4|G|1011
6GZX|1|A4|A|1012
6GZX|1|A4|G|1013
6GZX|1|A4|G|1014
6GZX|1|A4|G|1015
6GZX|1|A4|G|1016
6GZX|1|A4|A|1017
6GZX|1|A4|G|1018
6GZX|1|A4|C|1019
6GZX|1|A4|C|1020
6GZX|1|A4|C|1021
6GZX|1|A4|U|1022
6GZX|1|A4|A|1023
6GZX|1|A4|G|1024
6GZX|1|A4|C|1025
6GZX|1|A4|A|1026
6GZX|1|A4|C|1027
6GZX|1|A4|A|1028
6GZX|1|A4|G|1029
6GZX|1|A4|G|1030
6GZX|1|A4|U|1031
6GZX|1|A4|G|1032
*
6GZX|1|A4|C|1189
6GZX|1|A4|C|1190
6GZX|1|A4|C|1191
6GZX|1|A4|U|1192
6GZX|1|A4|U|1193
6GZX|1|A4|A|1194
6GZX|1|A4|C|1195
6GZX|1|A4|G|1196
6GZX|1|A4|G|1197
6GZX|1|A4|C|1198
6GZX|1|A4|C|1199

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain J4

30S ribosomal protein S10

Chain N4

30S ribosomal protein S14 type Z

Chain S4

30S ribosomal protein S19