J3_6GZX_057
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- CCAUAGCGG*CAGCGCCGAUGGUACUGGG*CCUGGGAGAGUAGGUCG
- Length
- 45 nucleotides
- Bulged bases
- 6GZX|1|B1|C|14, 6GZX|1|B1|A|15, 6GZX|1|B1|U|16, 6GZX|1|B1|G|84, 6GZX|1|B1|C|97
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZX|1|B1|C|13
6GZX|1|B1|C|14
6GZX|1|B1|A|15
6GZX|1|B1|U|16
6GZX|1|B1|A|17
6GZX|1|B1|G|18
6GZX|1|B1|C|19
6GZX|1|B1|G|20
6GZX|1|B1|G|21
*
6GZX|1|B1|C|67
6GZX|1|B1|A|68
6GZX|1|B1|G|69
6GZX|1|B1|C|70
6GZX|1|B1|G|71
6GZX|1|B1|C|72
6GZX|1|B1|C|73
6GZX|1|B1|G|74
6GZX|1|B1|A|75
6GZX|1|B1|U|76
6GZX|1|B1|G|77
6GZX|1|B1|G|78
6GZX|1|B1|U|79
6GZX|1|B1|A|80
6GZX|1|B1|C|81
6GZX|1|B1|U|82
6GZX|1|B1|G|83
6GZX|1|B1|G|84
6GZX|1|B1|G|85
*
6GZX|1|B1|C|96
6GZX|1|B1|C|97
6GZX|1|B1|U|98
6GZX|1|B1|G|99
6GZX|1|B1|G|100
6GZX|1|B1|G|101
6GZX|1|B1|A|102
6GZX|1|B1|G|103
6GZX|1|B1|A|104
6GZX|1|B1|G|105
6GZX|1|B1|U|106
6GZX|1|B1|A|107
6GZX|1|B1|G|108
6GZX|1|B1|G|109
6GZX|1|B1|U|110
6GZX|1|B1|C|111
6GZX|1|B1|G|112
Current chains
- Chain B1
- 5S ribosomal RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L1
- 50S ribosomal protein L16
- Chain N1
- 50S ribosomal protein L18
- Chain U1
- 50S ribosomal protein L25
- Chain V1
- 50S ribosomal protein L27
- Chain Y1
- 50S ribosomal protein L30
Coloring options: