J3_6GZX_065

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUGGAUGCC*GGUGAAAAGAAC*GAGUGAAAUAGAGCCUGAAAC

Length

42 nucleotides

Bulged bases

6GZX|1|A2|A|511, 6GZX|1|A2|U|531, 6GZX|1|A2|G|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|24
6GZX|1|A2|U|25
6GZX|1|A2|G|26
6GZX|1|A2|G|27
6GZX|1|A2|A|28
6GZX|1|A2|U|29
6GZX|1|A2|G|30
6GZX|1|A2|C|31
6GZX|1|A2|C|32
*
6GZX|1|A2|G|501
6GZX|1|A2|G|502
6GZX|1|A2|U|503
6GZX|1|A2|G|504
6GZX|1|A2|A|505
6GZX|1|A2|A|506
6GZX|1|A2|A|507
6GZX|1|A2|A|508
6GZX|1|A2|G|509
6GZX|1|A2|A|510
6GZX|1|A2|A|511
6GZX|1|A2|C|512
*
6GZX|1|A2|G|523
6GZX|1|A2|A|524
6GZX|1|A2|G|525
6GZX|1|A2|U|526
6GZX|1|A2|G|527
6GZX|1|A2|A|528
6GZX|1|A2|A|529
6GZX|1|A2|A|530
6GZX|1|A2|U|531
6GZX|1|A2|A|532
6GZX|1|A2|G|533
6GZX|1|A2|A|534
6GZX|1|A2|G|535
6GZX|1|A2|C|536
6GZX|1|A2|C|537
6GZX|1|A2|U|538
6GZX|1|A2|G|539
6GZX|1|A2|A|540
6GZX|1|A2|A|541
6GZX|1|A2|A|542
6GZX|1|A2|C|543

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain P2

50S ribosomal protein L20

Chain R2

50S ribosomal protein L22

Chain T2

50S ribosomal protein L24

Chain a2

50S ribosomal protein L32