J3_6GZX_066

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGAGCUUAAGCCGUUGAGGCGGAGGCGUAG*CGAGU*GCGCAAACGGCCCGCACGCGGGCCGAAAAG

Length

65 nucleotides

Bulged bases

6GZX|1|A2|U|640, 6GZX|1|A2|G|641, 6GZX|1|A2|A|642, 6GZX|1|A2|G|685, 6GZX|1|A2|C|686, 6GZX|1|A2|C|687, 6GZX|1|A2|C|688, 6GZX|1|A2|C|692, 6GZX|1|A2|G|693, 6GZX|1|A2|C|694, 6GZX|1|A2|C|698

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|626
6GZX|1|A2|G|627
6GZX|1|A2|A|628
6GZX|1|A2|G|629
6GZX|1|A2|C|630
6GZX|1|A2|U|631
6GZX|1|A2|U|632
6GZX|1|A2|A|633
6GZX|1|A2|A|634
6GZX|1|A2|G|635
6GZX|1|A2|C|636
6GZX|1|A2|C|637
6GZX|1|A2|G|638
6GZX|1|A2|U|639
6GZX|1|A2|U|640
6GZX|1|A2|G|641
6GZX|1|A2|A|642
6GZX|1|A2|G|643
6GZX|1|A2|G|644
6GZX|1|A2|C|645
6GZX|1|A2|G|646
6GZX|1|A2|G|647
6GZX|1|A2|A|648
6GZX|1|A2|G|649
6GZX|1|A2|G|650
6GZX|1|A2|C|651
6GZX|1|A2|G|652
6GZX|1|A2|U|653
6GZX|1|A2|A|654
6GZX|1|A2|G|655
*
6GZX|1|A2|C|662
6GZX|1|A2|G|663
6GZX|1|A2|A|664
6GZX|1|A2|G|665
6GZX|1|A2|U|666
*
6GZX|1|A2|G|676
6GZX|1|A2|C|677
6GZX|1|A2|G|678
6GZX|1|A2|C|679
6GZX|1|A2|A|680
6GZX|1|A2|A|681
6GZX|1|A2|A|682
6GZX|1|A2|C|683
6GZX|1|A2|G|684
6GZX|1|A2|G|685
6GZX|1|A2|C|686
6GZX|1|A2|C|687
6GZX|1|A2|C|688
6GZX|1|A2|G|689
6GZX|1|A2|C|690
6GZX|1|A2|A|691
6GZX|1|A2|C|692
6GZX|1|A2|G|693
6GZX|1|A2|C|694
6GZX|1|A2|G|695
6GZX|1|A2|G|696
6GZX|1|A2|G|697
6GZX|1|A2|C|698
6GZX|1|A2|C|699
6GZX|1|A2|G|700
6GZX|1|A2|A|701
6GZX|1|A2|A|702
6GZX|1|A2|A|703
6GZX|1|A2|A|704
6GZX|1|A2|G|705

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain K2

50S ribosomal protein L15

Chain d2

50S ribosomal protein L35