J3_6GZX_070

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCCUCAGGC*GCCGGAGAG*UAGAAGGGG

Length

27 nucleotides

Bulged bases

6GZX|1|A2|C|2311, 6GZX|1|A2|G|2348, 6GZX|1|A2|A|2350

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|C|2307
6GZX|1|A2|C|2308
6GZX|1|A2|C|2309
6GZX|1|A2|U|2310
6GZX|1|A2|C|2311
6GZX|1|A2|A|2312
6GZX|1|A2|G|2313
6GZX|1|A2|G|2314
6GZX|1|A2|C|2315
*
6GZX|1|A2|G|2329
6GZX|1|A2|C|2330
6GZX|1|A2|C|2331
6GZX|1|A2|G|2332
6GZX|1|A2|G|2333
6GZX|1|A2|A|2334
6GZX|1|A2|G|2335
6GZX|1|A2|A|2336
6GZX|1|A2|G|2337
*
6GZX|1|A2|U|2346
6GZX|1|A2|A|2347
6GZX|1|A2|G|2348
6GZX|1|A2|A|2349
6GZX|1|A2|A|2350
6GZX|1|A2|G|2351
6GZX|1|A2|G|2352
6GZX|1|A2|G|2353
6GZX|1|A2|G|2354

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain F2

50S ribosomal protein L5

Chain N2

50S ribosomal protein L18

Chain V2

50S ribosomal protein L27