J3_6GZX_072

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GACC*GUGGAUGGGC*GUCCCAAUCGUC

Length

26 nucleotides

Bulged bases

6GZX|1|A2|G|2845, 6GZX|1|A2|U|2896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZX|1|A2|G|2824
6GZX|1|A2|A|2825
6GZX|1|A2|C|2826
6GZX|1|A2|C|2827
*
6GZX|1|A2|G|2843
6GZX|1|A2|U|2844
6GZX|1|A2|G|2845
6GZX|1|A2|G|2846
6GZX|1|A2|A|2847
6GZX|1|A2|U|2848
6GZX|1|A2|G|2849
6GZX|1|A2|G|2850
6GZX|1|A2|G|2851
6GZX|1|A2|C|2852
*
6GZX|1|A2|G|2889
6GZX|1|A2|U|2890
6GZX|1|A2|C|2891
6GZX|1|A2|C|2892
6GZX|1|A2|C|2893
6GZX|1|A2|A|2894
6GZX|1|A2|A|2895
6GZX|1|A2|U|2896
6GZX|1|A2|C|2897
6GZX|1|A2|G|2898
6GZX|1|A2|U|2899
6GZX|1|A2|C|2900

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain M2

50S ribosomal protein L17

Chain O2

50S ribosomal protein L19

Chain R2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32