J3_6GZZ_001

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GACG*CGAUAAGCC*GGAUGUC

Length

20 nucleotides

Bulged bases

6GZZ|1|A1|A|73, 6GZZ|1|A1|G|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|G|54
6GZZ|1|A1|A|55
6GZZ|1|A1|C|56
6GZZ|1|A1|G|57
*
6GZZ|1|A1|C|68
6GZZ|1|A1|G|69
6GZZ|1|A1|A|70
6GZZ|1|A1|U|71
6GZZ|1|A1|A|72
6GZZ|1|A1|A|73
6GZZ|1|A1|G|74
6GZZ|1|A1|C|75
6GZZ|1|A1|C|76
*
6GZZ|1|A1|G|107
6GZZ|1|A1|G|108
6GZZ|1|A1|A|109
6GZZ|1|A1|U|110
6GZZ|1|A1|G|111
6GZZ|1|A1|U|112
6GZZ|1|A1|C|113

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain S1

50S ribosomal protein L23

Chain X1

50S ribosomal protein L29

Chain c1

50S ribosomal protein L34