J3_6GZZ_002

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UAAAC*GGGUCGUGG*CCG

Length

17 nucleotides

Bulged bases

6GZZ|1|A1|C|287, 6GZZ|1|A1|G|288, 6GZZ|1|A1|U|289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZZ_002 not in the Motif Atlas

Homologous match to J3_4WF9_014

Geometric discrepancy: 0.3506

The information below is about J3_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|U|259
6GZZ|1|A1|A|260
6GZZ|1|A1|A|261
6GZZ|1|A1|A|262
6GZZ|1|A1|C|263
*
6GZZ|1|A1|G|283
6GZZ|1|A1|G|284
6GZZ|1|A1|G|285
6GZZ|1|A1|U|286
6GZZ|1|A1|C|287
6GZZ|1|A1|G|288
6GZZ|1|A1|U|289
6GZZ|1|A1|G|290
6GZZ|1|A1|G|291
*
6GZZ|1|A1|C|396
6GZZ|1|A1|C|397
6GZZ|1|A1|G|398

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain W1

50S ribosomal protein L28