J3_6GZZ_003

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGCGAGCUA*UAG*CGAGCC

Length

18 nucleotides

Bulged bases

6GZZ|1|A1|G|735, 6GZZ|1|A1|G|841, 6GZZ|1|A1|A|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|G|730
6GZZ|1|A1|G|731
6GZZ|1|A1|C|732
6GZZ|1|A1|G|733
6GZZ|1|A1|A|734
6GZZ|1|A1|G|735
6GZZ|1|A1|C|736
6GZZ|1|A1|U|737
6GZZ|1|A1|A|738
*
6GZZ|1|A1|U|822
6GZZ|1|A1|A|823
6GZZ|1|A1|G|824
*
6GZZ|1|A1|C|840
6GZZ|1|A1|G|841
6GZZ|1|A1|A|842
6GZZ|1|A1|G|843
6GZZ|1|A1|C|844
6GZZ|1|A1|C|845

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain E1

50S ribosomal protein L4

Chain c1

50S ribosomal protein L34