J3_6GZZ_007

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6GZZ|1|A1|A|2532, 6GZZ|1|A1|A|2578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|C|2531
6GZZ|1|A1|A|2532
6GZZ|1|A1|U|2533
6GZZ|1|A1|C|2534
*
6GZZ|1|A1|G|2559
6GZZ|1|A1|U|2560
6GZZ|1|A1|U|2561
*
6GZZ|1|A1|A|2575
6GZZ|1|A1|U|2576
6GZZ|1|A1|U|2577
6GZZ|1|A1|A|2578
6GZZ|1|A1|A|2579
6GZZ|1|A1|A|2580
6GZZ|1|A1|G|2581

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain J1

50S ribosomal protein L14