3D structure

PDB id
6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
T. thermophilus hibernating 100S ribosome (amc)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.13 Å

Loop

Sequence
CCC*GGUGGAU*AAUCG
Length
15 nucleotides
Bulged bases
6GZZ|1|A1|U|2844, 6GZZ|1|A1|G|2845
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GZZ|1|A1|C|2826
6GZZ|1|A1|C|2827
6GZZ|1|A1|C|2828
*
6GZZ|1|A1|G|2842
6GZZ|1|A1|G|2843
6GZZ|1|A1|U|2844
6GZZ|1|A1|G|2845
6GZZ|1|A1|G|2846
6GZZ|1|A1|A|2847
6GZZ|1|A1|U|2848
*
6GZZ|1|A1|A|2894
6GZZ|1|A1|A|2895
6GZZ|1|A1|U|2896
6GZZ|1|A1|C|2897
6GZZ|1|A1|G|2898

Current chains

Chain A1
23S ribosomal RNA

Nearby chains

Chain D1
50S ribosomal protein L3
Chain M1
50S ribosomal protein L17
Chain O1
50S ribosomal protein L19
Chain a1
50S ribosomal protein L32

Coloring options:

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