J3_6GZZ_015

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UGUUG*CUAAC*GGACAGCG

Length

18 nucleotides

Bulged bases

6GZZ|1|A2|C|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|U|2113
6GZZ|1|A2|G|2114
6GZZ|1|A2|U|2115
6GZZ|1|A2|U|2116
6GZZ|1|A2|G|2117
*
6GZZ|1|A2|C|2220
6GZZ|1|A2|U|2221
6GZZ|1|A2|A|2222
6GZZ|1|A2|A|2223
6GZZ|1|A2|C|2224
*
6GZZ|1|A2|G|2237
6GZZ|1|A2|G|2238
6GZZ|1|A2|A|2239
6GZZ|1|A2|C|2240
6GZZ|1|A2|A|2241
6GZZ|1|A2|G|2242
6GZZ|1|A2|C|2243
6GZZ|1|A2|G|2244

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain H2

50S ribosomal protein L9

Chain W2

50S ribosomal protein L28