J3_6GZZ_017

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCC*GGUGGAU*AAUCG

Length

15 nucleotides

Bulged bases

6GZZ|1|A2|U|2844, 6GZZ|1|A2|G|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|2826
6GZZ|1|A2|C|2827
6GZZ|1|A2|C|2828
*
6GZZ|1|A2|G|2842
6GZZ|1|A2|G|2843
6GZZ|1|A2|U|2844
6GZZ|1|A2|G|2845
6GZZ|1|A2|G|2846
6GZZ|1|A2|A|2847
6GZZ|1|A2|U|2848
*
6GZZ|1|A2|A|2894
6GZZ|1|A2|A|2895
6GZZ|1|A2|U|2896
6GZZ|1|A2|C|2897
6GZZ|1|A2|G|2898

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain M2

50S ribosomal protein L17

Chain O2

50S ribosomal protein L19

Chain a2

50S ribosomal protein L32