J3_6GZZ_019

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZZ_019 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.2463

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A3|C|569
6GZZ|1|A3|G|570
6GZZ|1|A3|G|571
*
6GZZ|1|A3|C|634
6GZZ|1|A3|U|635
6GZZ|1|A3|A|636
6GZZ|1|A3|G|637
*
6GZZ|1|A3|C|737
6GZZ|1|A3|G|738

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain H3

30S ribosomal protein S8

Chain L3

30S ribosomal protein S12

Chain O3

30S ribosomal protein S15

Chain Q3

30S ribosomal protein S17