J3_6GZZ_020

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCUAG*CGAAG*CGUUAAGC

Length

18 nucleotides

Bulged bases

6GZZ|1|A3|U|848, 6GZZ|1|A3|A|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A3|G|808
6GZZ|1|A3|C|809
6GZZ|1|A3|U|810
6GZZ|1|A3|A|811
6GZZ|1|A3|G|812
*
6GZZ|1|A3|C|834
6GZZ|1|A3|G|835
6GZZ|1|A3|A|836
6GZZ|1|A3|A|837
6GZZ|1|A3|G|838
*
6GZZ|1|A3|C|845
6GZZ|1|A3|G|846
6GZZ|1|A3|U|847
6GZZ|1|A3|U|848
6GZZ|1|A3|A|849
6GZZ|1|A3|A|850
6GZZ|1|A3|G|851
6GZZ|1|A3|C|852

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain B3

30S ribosomal protein S2

Chain H3

30S ribosomal protein S8