J3_6GZZ_023

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GAAGAGG*CCAUGUG*CAAAGGGCUUUGCCCGCUUC

Length

34 nucleotides

Bulged bases

6GZZ|1|A4|U|208, 6GZZ|1|A4|U|209, 6GZZ|1|A4|U|210, 6GZZ|1|A4|C|212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|G|133
6GZZ|1|A4|A|134
6GZZ|1|A4|A|135
6GZZ|1|A4|G|136
6GZZ|1|A4|A|137
6GZZ|1|A4|G|138
6GZZ|1|A4|G|139
*
6GZZ|1|A4|C|171
6GZZ|1|A4|C|172
6GZZ|1|A4|A|173
6GZZ|1|A4|U|174
6GZZ|1|A4|G|175
6GZZ|1|A4|U|176
6GZZ|1|A4|G|177
*
6GZZ|1|A4|C|200
6GZZ|1|A4|A|201
6GZZ|1|A4|A|202
6GZZ|1|A4|A|203
6GZZ|1|A4|G|204
6GZZ|1|A4|G|205
6GZZ|1|A4|G|206
6GZZ|1|A4|C|207
6GZZ|1|A4|U|208
6GZZ|1|A4|U|209
6GZZ|1|A4|U|210
6GZZ|1|A4|G|211
6GZZ|1|A4|C|212
6GZZ|1|A4|C|213
6GZZ|1|A4|C|214
6GZZ|1|A4|G|215
6GZZ|1|A4|C|216
6GZZ|1|A4|U|217
6GZZ|1|A4|U|218
6GZZ|1|A4|C|219

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain T4

30S ribosomal protein S20