J3_6GZZ_035

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CAGGUGCGAUGGGGGGACGC*GCC*GAAAAGCCUCUAAGCACAACCUG

Length

46 nucleotides

Bulged bases

6GZZ|1|A1|G|1464, 6GZZ|1|A1|U|1468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|C|1459
6GZZ|1|A1|A|1460
6GZZ|1|A1|G|1461
6GZZ|1|A1|G|1462
6GZZ|1|A1|U|1463
6GZZ|1|A1|G|1464
6GZZ|1|A1|C|1465
6GZZ|1|A1|G|1466
6GZZ|1|A1|A|1467
6GZZ|1|A1|U|1468
6GZZ|1|A1|G|1469
6GZZ|1|A1|G|1470
6GZZ|1|A1|G|1471
6GZZ|1|A1|G|1472
6GZZ|1|A1|G|1473
6GZZ|1|A1|G|1474
6GZZ|1|A1|A|1475
6GZZ|1|A1|C|1476
6GZZ|1|A1|G|1477
6GZZ|1|A1|C|1478
*
6GZZ|1|A1|G|1612
6GZZ|1|A1|C|1613
6GZZ|1|A1|C|1614
*
6GZZ|1|A1|G|1617
6GZZ|1|A1|A|1618
6GZZ|1|A1|A|1619
6GZZ|1|A1|A|1620
6GZZ|1|A1|A|1621
6GZZ|1|A1|G|1622
6GZZ|1|A1|C|1623
6GZZ|1|A1|C|1624
6GZZ|1|A1|U|1625
6GZZ|1|A1|C|1626
6GZZ|1|A1|U|1627
6GZZ|1|A1|A|1628
6GZZ|1|A1|A|1629
6GZZ|1|A1|G|1630
6GZZ|1|A1|C|1631
6GZZ|1|A1|A|1632
6GZZ|1|A1|C|1633
6GZZ|1|A1|A|1634
6GZZ|1|A1|A|1635
6GZZ|1|A1|C|1636
6GZZ|1|A1|C|1637
6GZZ|1|A1|U|1638
6GZZ|1|A1|G|1639

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2