J3_6GZZ_036

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GACC*GGCC*GGGGAAGCCCGUACGGGUGACAACC

Length

33 nucleotides

Bulged bases

6GZZ|1|A1|A|1493, 6GZZ|1|A1|U|1583, 6GZZ|1|A1|A|1584, 6GZZ|1|A1|C|1592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|G|1492
6GZZ|1|A1|A|1493
6GZZ|1|A1|C|1494
6GZZ|1|A1|C|1495
*
6GZZ|1|A1|G|1514
6GZZ|1|A1|G|1515
6GZZ|1|A1|C|1516
6GZZ|1|A1|C|1517
*
6GZZ|1|A1|G|1572
6GZZ|1|A1|G|1573
6GZZ|1|A1|G|1574
6GZZ|1|A1|G|1575
6GZZ|1|A1|A|1576
6GZZ|1|A1|A|1577
6GZZ|1|A1|G|1578
6GZZ|1|A1|C|1579
6GZZ|1|A1|C|1580
6GZZ|1|A1|C|1581
6GZZ|1|A1|G|1582
6GZZ|1|A1|U|1583
6GZZ|1|A1|A|1584
6GZZ|1|A1|C|1585
6GZZ|1|A1|G|1586
6GZZ|1|A1|G|1587
6GZZ|1|A1|G|1588
6GZZ|1|A1|U|1589
6GZZ|1|A1|G|1590
6GZZ|1|A1|A|1591
6GZZ|1|A1|C|1592
6GZZ|1|A1|A|1593
6GZZ|1|A1|A|1594
6GZZ|1|A1|C|1595
6GZZ|1|A1|C|1596

Current chains

Chain A1

23S ribosomal RNA

Nearby chains