J3_6GZZ_039

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUGGAUGC*GUGAAAAGAACC*GGAGUGAAAUAGAGCCUGAAAC

Length

42 nucleotides

Bulged bases

6GZZ|1|A2|U|531, 6GZZ|1|A2|G|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|G|24
6GZZ|1|A2|U|25
6GZZ|1|A2|G|26
6GZZ|1|A2|G|27
6GZZ|1|A2|A|28
6GZZ|1|A2|U|29
6GZZ|1|A2|G|30
6GZZ|1|A2|C|31
*
6GZZ|1|A2|G|502
6GZZ|1|A2|U|503
6GZZ|1|A2|G|504
6GZZ|1|A2|A|505
6GZZ|1|A2|A|506
6GZZ|1|A2|A|507
6GZZ|1|A2|A|508
6GZZ|1|A2|G|509
6GZZ|1|A2|A|510
6GZZ|1|A2|A|511
6GZZ|1|A2|C|512
6GZZ|1|A2|C|513
*
6GZZ|1|A2|G|522
6GZZ|1|A2|G|523
6GZZ|1|A2|A|524
6GZZ|1|A2|G|525
6GZZ|1|A2|U|526
6GZZ|1|A2|G|527
6GZZ|1|A2|A|528
6GZZ|1|A2|A|529
6GZZ|1|A2|A|530
6GZZ|1|A2|U|531
6GZZ|1|A2|A|532
6GZZ|1|A2|G|533
6GZZ|1|A2|A|534
6GZZ|1|A2|G|535
6GZZ|1|A2|C|536
6GZZ|1|A2|C|537
6GZZ|1|A2|U|538
6GZZ|1|A2|G|539
6GZZ|1|A2|A|540
6GZZ|1|A2|A|541
6GZZ|1|A2|A|542
6GZZ|1|A2|C|543

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain P2

50S ribosomal protein L20

Chain R2

50S ribosomal protein L22

Chain T2

50S ribosomal protein L24

Chain a2

50S ribosomal protein L32