J3_6GZZ_046

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUUG*CGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUG*CCUGCACGAAAAG

Length

58 nucleotides

Bulged bases

6GZZ|1|A2|U|1867, 6GZZ|1|A2|C|1932, 6GZZ|1|A2|A|1936, 6GZZ|1|A2|C|1938, 6GZZ|1|A2|A|1942, 6GZZ|1|A2|A|1943, 6GZZ|1|A2|C|1948, 6GZZ|1|A2|A|1962, 6GZZ|1|A2|U|1968, 6GZZ|1|A2|A|1995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|1865
6GZZ|1|A2|U|1866
6GZZ|1|A2|U|1867
6GZZ|1|A2|G|1868
*
6GZZ|1|A2|C|1929
6GZZ|1|A2|G|1930
6GZZ|1|A2|G|1931
6GZZ|1|A2|C|1932
6GZZ|1|A2|C|1933
6GZZ|1|A2|G|1934
6GZZ|1|A2|U|1935
6GZZ|1|A2|A|1936
6GZZ|1|A2|A|1937
6GZZ|1|A2|C|1938
6GZZ|1|A2|U|1939
6GZZ|1|A2|A|1940
6GZZ|1|A2|U|1941
6GZZ|1|A2|A|1942
6GZZ|1|A2|A|1943
6GZZ|1|A2|C|1944
6GZZ|1|A2|G|1945
6GZZ|1|A2|G|1946
6GZZ|1|A2|U|1947
6GZZ|1|A2|C|1948
6GZZ|1|A2|C|1949
6GZZ|1|A2|U|1950
6GZZ|1|A2|A|1951
6GZZ|1|A2|A|1952
6GZZ|1|A2|G|1953
6GZZ|1|A2|G|1954
6GZZ|1|A2|U|1955
6GZZ|1|A2|A|1956
6GZZ|1|A2|G|1957
6GZZ|1|A2|C|1958
6GZZ|1|A2|G|1959
6GZZ|1|A2|A|1960
6GZZ|1|A2|A|1961
6GZZ|1|A2|A|1962
6GZZ|1|A2|U|1963
6GZZ|1|A2|U|1964
6GZZ|1|A2|C|1965
6GZZ|1|A2|C|1966
6GZZ|1|A2|U|1967
6GZZ|1|A2|U|1968
6GZZ|1|A2|G|1969
*
6GZZ|1|A2|C|1985
6GZZ|1|A2|C|1986
6GZZ|1|A2|U|1987
6GZZ|1|A2|G|1988
6GZZ|1|A2|C|1989
6GZZ|1|A2|A|1990
6GZZ|1|A2|C|1991
6GZZ|1|A2|G|1992
6GZZ|1|A2|A|1993
6GZZ|1|A2|A|1994
6GZZ|1|A2|A|1995
6GZZ|1|A2|A|1996
6GZZ|1|A2|G|1997

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2