J3_6GZZ_048

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGCAUCCU*GGGUUGG*CCAUUAAAGCG

Length

26 nucleotides

Bulged bases

6GZZ|1|A2|A|2532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A2|C|2529
6GZZ|1|A2|G|2530
6GZZ|1|A2|C|2531
6GZZ|1|A2|A|2532
6GZZ|1|A2|U|2533
6GZZ|1|A2|C|2534
6GZZ|1|A2|C|2535
6GZZ|1|A2|U|2536
*
6GZZ|1|A2|G|2557
6GZZ|1|A2|G|2558
6GZZ|1|A2|G|2559
6GZZ|1|A2|U|2560
6GZZ|1|A2|U|2561
6GZZ|1|A2|G|2562
6GZZ|1|A2|G|2563
*
6GZZ|1|A2|C|2573
6GZZ|1|A2|C|2574
6GZZ|1|A2|A|2575
6GZZ|1|A2|U|2576
6GZZ|1|A2|U|2577
6GZZ|1|A2|A|2578
6GZZ|1|A2|A|2579
6GZZ|1|A2|A|2580
6GZZ|1|A2|G|2581
6GZZ|1|A2|C|2582
6GZZ|1|A2|G|2583

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain I2

50S ribosomal protein L13

Chain J2

50S ribosomal protein L14