J3_6GZZ_056

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUGCCCAUAG*CG*UCGGUGCG

Length

21 nucleotides

Bulged bases

6GZZ|1|B2|A|15, 6GZZ|1|B2|U|16, 6GZZ|1|B2|C|111, 6GZZ|1|B2|U|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|B2|C|8
6GZZ|1|B2|G|9
6GZZ|1|B2|U|10
6GZZ|1|B2|G|11
6GZZ|1|B2|C|12
6GZZ|1|B2|C|13
6GZZ|1|B2|C|14
6GZZ|1|B2|A|15
6GZZ|1|B2|U|16
6GZZ|1|B2|A|17
6GZZ|1|B2|G|18
*
6GZZ|1|B2|C|70
6GZZ|1|B2|G|71
*
6GZZ|1|B2|U|110
6GZZ|1|B2|C|111
6GZZ|1|B2|G|112
6GZZ|1|B2|G|113
6GZZ|1|B2|U|114
6GZZ|1|B2|G|115
6GZZ|1|B2|C|116
6GZZ|1|B2|G|117

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain N2

50S ribosomal protein L18

Chain U2

50S ribosomal protein L25

Chain V2

50S ribosomal protein L27