J3_6GZZ_063

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCGACUGUUUACCAAAAACACAG*CGAC*GUAACGAC

Length

35 nucleotides

Bulged bases

6GZZ|1|A1|A|1813, 6GZZ|1|A1|C|1814, 6GZZ|1|A1|C|1815, 6GZZ|1|A1|A|1819, 6GZZ|1|A1|A|2005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A1|G|1803
6GZZ|1|A1|C|1804
6GZZ|1|A1|G|1805
6GZZ|1|A1|A|1806
6GZZ|1|A1|C|1807
6GZZ|1|A1|U|1808
6GZZ|1|A1|G|1809
6GZZ|1|A1|U|1810
6GZZ|1|A1|U|1811
6GZZ|1|A1|U|1812
6GZZ|1|A1|A|1813
6GZZ|1|A1|C|1814
6GZZ|1|A1|C|1815
6GZZ|1|A1|A|1816
6GZZ|1|A1|A|1817
6GZZ|1|A1|A|1818
6GZZ|1|A1|A|1819
6GZZ|1|A1|A|1820
6GZZ|1|A1|C|1821
6GZZ|1|A1|A|1822
6GZZ|1|A1|C|1823
6GZZ|1|A1|A|1824
6GZZ|1|A1|G|1825
*
6GZZ|1|A1|C|1860
6GZZ|1|A1|G|1861
6GZZ|1|A1|A|1862
6GZZ|1|A1|C|1863
*
6GZZ|1|A1|G|1999
6GZZ|1|A1|U|2000
6GZZ|1|A1|A|2001
6GZZ|1|A1|A|2002
6GZZ|1|A1|C|2003
6GZZ|1|A1|G|2004
6GZZ|1|A1|A|2005
6GZZ|1|A1|C|2006

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain c1

50S ribosomal protein L34