J3_6GZZ_070

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CCGCACAAG*CUAGUAA*UGAAUACGUUCCCGG

Length

31 nucleotides

Bulged bases

6GZZ|1|A4|U|1362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZZ|1|A4|C|908
6GZZ|1|A4|C|909
6GZZ|1|A4|G|910
6GZZ|1|A4|C|911
6GZZ|1|A4|A|912
6GZZ|1|A4|C|913
6GZZ|1|A4|A|914
6GZZ|1|A4|A|915
6GZZ|1|A4|G|916
*
6GZZ|1|A4|C|1325
6GZZ|1|A4|U|1326
6GZZ|1|A4|A|1327
6GZZ|1|A4|G|1328
6GZZ|1|A4|U|1329
6GZZ|1|A4|A|1330
6GZZ|1|A4|A|1331
*
6GZZ|1|A4|U|1354
6GZZ|1|A4|G|1355
6GZZ|1|A4|A|1356
6GZZ|1|A4|A|1357
6GZZ|1|A4|U|1358
6GZZ|1|A4|A|1359
6GZZ|1|A4|C|1360
6GZZ|1|A4|G|1361
6GZZ|1|A4|U|1362
6GZZ|1|A4|U|1363
6GZZ|1|A4|C|1364
6GZZ|1|A4|C|1365
6GZZ|1|A4|C|1366
6GZZ|1|A4|G|1367
6GZZ|1|A4|G|1368

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain G4

30S ribosomal protein S7

Chain I4

30S ribosomal protein S9

Chain V4

Ribosome hibernation promoting factor