J3_6H4N_005

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H4N_005 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2758

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6H4N|1|A|G|1055
6H4N|1|A|G|1056
6H4N|1|A|A|1057
*
6H4N|1|A|U|1081
6H4N|1|A|U|1082
6H4N|1|A|U|1083
6H4N|1|A|A|1084
6H4N|1|A|A|1085
6H4N|1|A|A|1086
6H4N|1|A|G|1087
*
6H4N|1|A|C|1102
6H4N|1|A|A|1103
6H4N|1|A|C|1104

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36