3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
6H4N|1|a|A|975, 6H4N|1|a|G|976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6H4N_021 not in the Motif Atlas
Homologous match to J3_5J7L_006
Geometric discrepancy: 0.0761
The information below is about J3_5J7L_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6H4N|1|a|U|955
6H4N|1|a|U|956
6H4N|1|a|U|957
6H4N|1|a|A|958
6H4N|1|a|A|959
6H4N|1|a|U|960
6H4N|1|a|U|961
6H4N|1|a|C|962
*
6H4N|1|a|G|973
6H4N|1|a|A|974
6H4N|1|a|A|975
6H4N|1|a|G|976
6H4N|1|a|A|977
6H4N|1|a|A|978
6H4N|1|a|C|979
6H4N|1|a|C|980
6H4N|1|a|U|981
6H4N|1|a|U|982
6H4N|1|a|A|983
6H4N|1|a|C|984
*
6H4N|1|a|G|1221
6H4N|1|a|G|1222
6H4N|1|a|C|1223
6H4N|1|a|U|1224
6H4N|1|a|A|1225

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain j
30S ribosomal protein S10
Chain m
30S ribosomal protein S13
Chain n
30S ribosomal protein S14
Chain s
30S ribosomal protein S19
Chain x
Ribosome hibernation promoting factor

Coloring options:


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