J3_6H58_028
3D structure
- PDB id
- 6H58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.9 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 6H58|1|BB|U|14, 6H58|1|BB|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6H58_028 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.0839
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6H58|1|BB|G|10
6H58|1|BB|C|11
6H58|1|BB|C|12
6H58|1|BB|G|13
6H58|1|BB|U|14
6H58|1|BB|A|15
6H58|1|BB|G|16
*
6H58|1|BB|C|68
6H58|1|BB|G|69
6H58|1|BB|C|70
*
6H58|1|BB|G|106
6H58|1|BB|G|107
6H58|1|BB|A|108
6H58|1|BB|A|109
6H58|1|BB|C|110
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain OO
- 50S ribosomal protein L18
- Chain VV
- 50S ribosomal protein L25
- Chain WW
- 50S ribosomal protein L27
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