J3_6H58_041

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H58_041 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.0984

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6H58|1|aa|G|46
6H58|1|aa|C|47
*
6H58|1|aa|G|361
6H58|1|aa|G|362
6H58|1|aa|A|363
6H58|1|aa|A|364
6H58|1|aa|U|365
6H58|1|aa|A|366
6H58|1|aa|U|367
*
6H58|1|aa|A|393
6H58|1|aa|G|394
6H58|1|aa|C|395

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain ll

30S ribosomal protein S12

Chain pp

30S ribosomal protein S16