3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
6H58|1|aa|A|1101
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6H58_050 not in the Motif Atlas
Homologous match to J3_6CZR_024
Geometric discrepancy: 0.1599
The information below is about J3_6CZR_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04260.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6H58|1|aa|U|1073
6H58|1|aa|G|1074
*
6H58|1|aa|U|1083
6H58|1|aa|G|1084
6H58|1|aa|U|1085
6H58|1|aa|U|1086
6H58|1|aa|G|1087
*
6H58|1|aa|C|1098
6H58|1|aa|G|1099
6H58|1|aa|C|1100
6H58|1|aa|A|1101
6H58|1|aa|A|1102

Current chains

Chain aa
16S ribosomal RNA

Nearby chains

Chain bb
30S ribosomal protein S2
Chain ee
30S ribosomal protein S5
Chain uu
30S ribosomal protein S21
Chain vv
Ribosome modulation factor

Coloring options:


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