J3_6H58_060

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6H58|1|AA|U|321, 6H58|1|AA|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H58_060 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.068

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6H58|1|AA|G|297
6H58|1|AA|G|298
6H58|1|AA|A|299
6H58|1|AA|A|300
6H58|1|AA|G|301
*
6H58|1|AA|C|316
6H58|1|AA|G|317
6H58|1|AA|C|318
6H58|1|AA|G|319
6H58|1|AA|A|320
6H58|1|AA|U|321
6H58|1|AA|A|322
6H58|1|AA|C|323
6H58|1|AA|A|324
6H58|1|AA|G|325
*
6H58|1|AA|C|337
6H58|1|AA|G|338
6H58|1|AA|U|339
6H58|1|AA|A|340
6H58|1|AA|C|341

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain EE

50S ribosomal protein L4

Chain UU

50S ribosomal protein L24