J3_6HA1_002
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACGGGACGAACA*UGC*GAUUU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_002 not in the Motif Atlas
- Geometric match to J3_4WF9_001
- Geometric discrepancy: 0.2823
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6HA1|1|A|A|56
6HA1|1|A|C|57
6HA1|1|A|G|58
6HA1|1|A|G|59
6HA1|1|A|G|60
6HA1|1|A|A|61
6HA1|1|A|C|62
6HA1|1|A|G|63
6HA1|1|A|A|64
6HA1|1|A|A|65
6HA1|1|A|C|66
6HA1|1|A|A|67
*
6HA1|1|A|U|74
6HA1|1|A|G|75
6HA1|1|A|C|76
*
6HA1|1|A|G|109
6HA1|1|A|A|110
6HA1|1|A|U|111
6HA1|1|A|U|112
6HA1|1|A|U|113
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain T
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L29
Coloring options: