J3_6HA1_003

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6HA1|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1629

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6HA1|1|A|C|272
6HA1|1|A|A|273
6HA1|1|A|A|274
6HA1|1|A|A|275
6HA1|1|A|C|276
*
6HA1|1|A|G|295
6HA1|1|A|G|296
6HA1|1|A|G|297
6HA1|1|A|U|298
6HA1|1|A|U|299
6HA1|1|A|G|300
6HA1|1|A|U|301
6HA1|1|A|A|302
*
6HA1|1|A|U|416
6HA1|1|A|G|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains