J3_6HA1_004
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6HA1|1|A|U|733, 6HA1|1|A|G|839, 6HA1|1|A|A|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_004 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0898
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HA1|1|A|U|730
6HA1|1|A|G|731
6HA1|1|A|A|732
6HA1|1|A|U|733
6HA1|1|A|C|734
6HA1|1|A|U|735
6HA1|1|A|A|736
*
6HA1|1|A|U|820
6HA1|1|A|A|821
6HA1|1|A|G|822
*
6HA1|1|A|C|838
6HA1|1|A|G|839
6HA1|1|A|A|840
6HA1|1|A|A|841
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
- Chain E
- 50S ribosomal protein L4
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