J3_6HA1_006

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAGAGUGC*GCUCAC

Length

21 nucleotides

Bulged bases

6HA1|1|A|A|1134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HA1|1|A|G|1101
6HA1|1|A|G|1102
6HA1|1|A|A|1103
*
6HA1|1|A|U|1127
6HA1|1|A|U|1128
6HA1|1|A|U|1129
6HA1|1|A|A|1130
6HA1|1|A|A|1131
6HA1|1|A|A|1132
6HA1|1|A|G|1133
6HA1|1|A|A|1134
6HA1|1|A|G|1135
6HA1|1|A|U|1136
6HA1|1|A|G|1137
6HA1|1|A|C|1138
*
6HA1|1|A|G|1145
6HA1|1|A|C|1146
6HA1|1|A|U|1147
6HA1|1|A|C|1148
6HA1|1|A|A|1149
6HA1|1|A|C|1150

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6