J3_6HA1_010

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6HA1_010 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.1505

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6HA1|1|A|U|2120
6HA1|1|A|U|2121
6HA1|1|A|G|2122
*
6HA1|1|A|C|2225
6HA1|1|A|U|2226
6HA1|1|A|A|2227
6HA1|1|A|A|2228
6HA1|1|A|C|2229
6HA1|1|A|C|2230
*
6HA1|1|A|G|2251
6HA1|1|A|A|2252
6HA1|1|A|G|2253
6HA1|1|A|A|2254
6HA1|1|A|C|2255
6HA1|1|A|A|2256
6HA1|1|A|G|2257

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28