J3_6HA1_011
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAG*CGCAGAG*CACAAG
- Length
- 18 nucleotides
- Bulged bases
- 6HA1|1|A|C|2363, 6HA1|1|A|A|2365
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_011 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.464
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6HA1|1|A|C|2324
6HA1|1|A|U|2325
6HA1|1|A|C|2326
6HA1|1|A|A|2327
6HA1|1|A|G|2328
*
6HA1|1|A|C|2346
6HA1|1|A|G|2347
6HA1|1|A|C|2348
6HA1|1|A|A|2349
6HA1|1|A|G|2350
6HA1|1|A|A|2351
6HA1|1|A|G|2352
*
6HA1|1|A|C|2361
6HA1|1|A|A|2362
6HA1|1|A|C|2363
6HA1|1|A|A|2364
6HA1|1|A|A|2365
6HA1|1|A|G|2366
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
Coloring options: