J3_6HA1_013

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCC*GUUGAU*AAUCGA

Length

15 nucleotides

Bulged bases

6HA1|1|A|U|2858, 6HA1|1|A|A|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HA1|1|A|U|2838
6HA1|1|A|C|2839
6HA1|1|A|C|2840
*
6HA1|1|A|G|2856
6HA1|1|A|U|2857
6HA1|1|A|U|2858
6HA1|1|A|G|2859
6HA1|1|A|A|2860
6HA1|1|A|U|2861
*
6HA1|1|A|A|2907
6HA1|1|A|A|2908
6HA1|1|A|U|2909
6HA1|1|A|C|2910
6HA1|1|A|G|2911
6HA1|1|A|A|2912

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17