J3_6HA1_020
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_020 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.0927
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6HA1|1|a|U|953
6HA1|1|a|G|954
6HA1|1|a|G|955
6HA1|1|a|A|956
*
6HA1|1|a|U|1244
6HA1|1|a|A|1245
6HA1|1|a|C|1246
*
6HA1|1|a|G|1346
6HA1|1|a|G|1347
6HA1|1|a|A|1348
6HA1|1|a|A|1349
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain m
- 30S ribosomal protein S13
- Chain x
- Transfer RNA; tRNA
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