J3_6HA1_021
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6HA1|1|a|A|985, 6HA1|1|a|G|986, 6HA1|1|a|A|988
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_021 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1074
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HA1|1|a|U|965
6HA1|1|a|U|966
6HA1|1|a|U|967
6HA1|1|a|A|968
6HA1|1|a|A|969
6HA1|1|a|U|970
6HA1|1|a|U|971
6HA1|1|a|C|972
*
6HA1|1|a|G|983
6HA1|1|a|A|984
6HA1|1|a|A|985
6HA1|1|a|G|986
6HA1|1|a|A|987
6HA1|1|a|A|988
6HA1|1|a|C|989
6HA1|1|a|C|990
6HA1|1|a|U|991
6HA1|1|a|U|992
6HA1|1|a|A|993
6HA1|1|a|C|994
*
6HA1|1|a|G|1230
6HA1|1|a|G|1231
6HA1|1|a|C|1232
6HA1|1|a|U|1233
6HA1|1|a|A|1234
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
Coloring options: