J3_6HA1_033
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6HA1|1|A|U|2419, 6HA1|1|A|A|2455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HA1_033 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1123
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6HA1|1|A|G|2311
6HA1|1|A|C|2312
6HA1|1|A|C|2313
*
6HA1|1|A|G|2413
6HA1|1|A|C|2414
6HA1|1|A|U|2415
6HA1|1|A|U|2416
6HA1|1|A|A|2417
6HA1|1|A|G|2418
6HA1|1|A|U|2419
6HA1|1|A|G|2420
6HA1|1|A|A|2421
6HA1|1|A|U|2422
6HA1|1|A|C|2423
6HA1|1|A|C|2424
*
6HA1|1|A|G|2450
6HA1|1|A|C|2451
6HA1|1|A|U|2452
6HA1|1|A|C|2453
6HA1|1|A|A|2454
6HA1|1|A|A|2455
6HA1|1|A|C|2456
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
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