J3_6HA1_040

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAUGG*UCUCAGUUC*GCUG

Length

19 nucleotides

Bulged bases

6HA1|1|a|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HA1|1|a|C|1246
6HA1|1|a|A|1247
6HA1|1|a|A|1248
6HA1|1|a|U|1249
6HA1|1|a|G|1250
6HA1|1|a|G|1251
*
6HA1|1|a|U|1304
6HA1|1|a|C|1305
6HA1|1|a|U|1306
6HA1|1|a|C|1307
6HA1|1|a|A|1308
6HA1|1|a|G|1309
6HA1|1|a|U|1310
6HA1|1|a|U|1311
6HA1|1|a|C|1312
*
6HA1|1|a|G|1343
6HA1|1|a|C|1344
6HA1|1|a|U|1345
6HA1|1|a|G|1346

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain m

30S ribosomal protein S13