J3_6HCF_004

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAG*CGUAGC*GUCCGAC

Length

17 nucleotides

Bulged bases

6HCF|1|52|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|1545
6HCF|1|52|C|1546
6HCF|1|52|A|1547
6HCF|1|52|G|1548
*
6HCF|1|52|C|1580
6HCF|1|52|G|1581
6HCF|1|52|U|1582
6HCF|1|52|A|1583
6HCF|1|52|G|1584
6HCF|1|52|C|1585
*
6HCF|1|52|G|1608
6HCF|1|52|U|1609
6HCF|1|52|C|1610
6HCF|1|52|C|1611
6HCF|1|52|G|1612
6HCF|1|52|A|1613
6HCF|1|52|C|1614

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain A3

Ribosomal protein L8

Chain R3

eL19

Chain g3

eL34

Chain j3

Ribosomal protein L37

Chain p3

eL43