J3_6HCF_005

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGAAGUGG*CCAAG*CUCUGG

Length

20 nucleotides

Bulged bases

6HCF|1|52|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|2392
6HCF|1|52|C|2393
6HCF|1|52|G|2394
6HCF|1|52|A|2395
6HCF|1|52|A|2396
6HCF|1|52|G|2397
6HCF|1|52|U|2398
6HCF|1|52|G|2399
6HCF|1|52|G|2400
*
6HCF|1|52|C|2804
6HCF|1|52|C|2805
6HCF|1|52|A|2806
6HCF|1|52|A|2807
6HCF|1|52|G|2808
*
6HCF|1|52|C|2818
6HCF|1|52|U|2819
6HCF|1|52|C|2820
6HCF|1|52|U|2821
6HCF|1|52|G|2822
6HCF|1|52|G|2823

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain R3

eL19

Chain d3

eL31

Chain g3

eL34