J3_6HCF_008

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACCAUUCG*CCUGCUUCU*AAGGGU

Length

23 nucleotides

Bulged bases

6HCF|1|52|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|A|4968
6HCF|1|52|C|4969
6HCF|1|52|C|4970
6HCF|1|52|A|4971
6HCF|1|52|U|4972
6HCF|1|52|U|4973
6HCF|1|52|C|4974
6HCF|1|52|G|4975
*
6HCF|1|52|C|4983
6HCF|1|52|C|4984
6HCF|1|52|U|4985
6HCF|1|52|G|4986
6HCF|1|52|C|4987
6HCF|1|52|U|4988
6HCF|1|52|U|4989
6HCF|1|52|C|4990
6HCF|1|52|U|4991
*
6HCF|1|52|A|5060
6HCF|1|52|A|5061
6HCF|1|52|G|5062
6HCF|1|52|G|5063
6HCF|1|52|G|5064
6HCF|1|52|U|5065

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain B3

uL3

Chain P3

uL22

Chain d3

eL31