J3_6HCF_013
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGACUG*UUCCG*CAAAGUCUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 6HCF|1|A1|C|1138, 6HCF|1|A1|A|1150, 6HCF|1|A1|C|1153, 6HCF|1|A1|U|1155, 6HCF|1|A1|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|C|1091
6HCF|1|A1|G|1092
6HCF|1|A1|A|1093
6HCF|1|A1|C|1094
6HCF|1|A1|U|1095
6HCF|1|A1|G|1096
*
6HCF|1|A1|U|1136
6HCF|1|A1|U|1137
6HCF|1|A1|C|1138
6HCF|1|A1|C|1139
6HCF|1|A1|G|1140
*
6HCF|1|A1|C|1147
6HCF|1|A1|A|1148
6HCF|1|A1|A|1149
6HCF|1|A1|A|1150
6HCF|1|A1|G|1151
6HCF|1|A1|U|1152
6HCF|1|A1|C|1153
6HCF|1|A1|U|1154
6HCF|1|A1|U|1155
6HCF|1|A1|U|1156
6HCF|1|A1|G|1157
6HCF|1|A1|G|1158
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain B1
- uS2
- Chain D1
- uS5
- Chain M1
- Ribosomal protein S11
- Chain O1
- uS15
- Chain W1
- eS21
- Chain X1
- Ribosomal protein S15a
- Chain Y1
- uS12
- Chain b1
- eS26
- Chain c1
- 40S ribosomal protein S27
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