J3_6HCF_015
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCUUAAUUUG*CGGGAAACCUCAC*GGCUGC
- Length
- 29 nucleotides
- Bulged bases
- 6HCF|1|A1|G|1256, 6HCF|1|A1|A|1258, 6HCF|1|A1|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|G|1236
6HCF|1|A1|C|1237
6HCF|1|A1|U|1238
6HCF|1|A1|U|1239
6HCF|1|A1|A|1240
6HCF|1|A1|A|1241
6HCF|1|A1|U|1242
6HCF|1|A1|U|1243
6HCF|1|A1|U|1244
6HCF|1|A1|G|1245
*
6HCF|1|A1|C|1254
6HCF|1|A1|G|1255
6HCF|1|A1|G|1256
6HCF|1|A1|G|1257
6HCF|1|A1|A|1258
6HCF|1|A1|A|1259
6HCF|1|A1|A|1260
6HCF|1|A1|C|1261
6HCF|1|A1|C|1262
6HCF|1|A1|U|1263
6HCF|1|A1|C|1264
6HCF|1|A1|A|1265
6HCF|1|A1|C|1266
*
6HCF|1|A1|G|1516
6HCF|1|A1|G|1517
6HCF|1|A1|C|1518
6HCF|1|A1|U|1519
6HCF|1|A1|G|1520
6HCF|1|A1|C|1521
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain Q1
- uS19
- Chain R1
- Ribosomal protein S16
- Chain T1
- uS13
- Chain V1
- uS10
- Chain e1
- uS14
- Chain j1
- eRF1(AAQ)
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