J3_6HCF_016
3D structure
- PDB id
- 6HCF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCCGGAC*GGGUG*UUAGAUGUC
- Length
- 22 nucleotides
- Bulged bases
- 6HCF|1|A1|G|1274, 6HCF|1|A1|G|1507, 6HCF|1|A1|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6HCF|1|A1|G|1270
6HCF|1|A1|C|1271
6HCF|1|A1|C|1272
6HCF|1|A1|C|1273
6HCF|1|A1|G|1274
6HCF|1|A1|G|1275
6HCF|1|A1|A|1276
6HCF|1|A1|C|1277
*
6HCF|1|A1|G|1320
6HCF|1|A1|G|1321
6HCF|1|A1|G|1322
6HCF|1|A1|U|1323
6HCF|1|A1|G|1324
*
6HCF|1|A1|U|1504
6HCF|1|A1|U|1505
6HCF|1|A1|A|1506
6HCF|1|A1|G|1507
6HCF|1|A1|A|1508
6HCF|1|A1|U|1509
6HCF|1|A1|G|1510
6HCF|1|A1|U|1511
6HCF|1|A1|C|1512
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain L1
- eS10
- Chain e1
- uS14
- Chain g1
- Ribosomal protein S27a
- Chain j1
- eRF1(AAQ)
Coloring options: