J3_6HCF_023

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGUC*GUGCGCC*GGCGAUG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|C|451
6HCF|1|52|A|452
6HCF|1|52|G|453
6HCF|1|52|U|454
6HCF|1|52|C|455
*
6HCF|1|52|G|701
6HCF|1|52|U|702
6HCF|1|52|G|703
6HCF|1|52|C|704
6HCF|1|52|G|705
6HCF|1|52|C|706
6HCF|1|52|C|707
*
6HCF|1|52|G|1290
6HCF|1|52|G|1291
6HCF|1|52|C|1292
6HCF|1|52|G|1293
6HCF|1|52|A|1294
6HCF|1|52|U|1295
6HCF|1|52|G|1296

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain E3

60S ribosomal protein L6

Chain e3

eL32

Chain f3

eL33

Chain r3

eL28