J3_6HCF_024

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCCCC*GGGCCGGGCC*GGGCCACGCGUCCCCCGCG

Length

34 nucleotides

Bulged bases

6HCF|1|52|C|1237, 6HCF|1|52|C|1239, 6HCF|1|52|G|1244, 6HCF|1|52|C|1245, 6HCF|1|52|G|1246, 6HCF|1|52|G|1271, 6HCF|1|52|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|U|982
6HCF|1|52|C|983
6HCF|1|52|C|984
6HCF|1|52|C|985
6HCF|1|52|C|986
*
6HCF|1|52|G|1068
6HCF|1|52|G|1069
6HCF|1|52|G|1070
6HCF|1|52|C|1071
6HCF|1|52|C|1072
6HCF|1|52|G|1073
6HCF|1|52|G|1074
6HCF|1|52|G|1075
6HCF|1|52|C|1076
6HCF|1|52|C|1077
*
6HCF|1|52|G|1233
6HCF|1|52|G|1234
6HCF|1|52|G|1235
6HCF|1|52|C|1236
6HCF|1|52|C|1237
6HCF|1|52|A|1238
6HCF|1|52|C|1239
6HCF|1|52|G|1244
6HCF|1|52|C|1245
6HCF|1|52|G|1246
6HCF|1|52|U|1247
6HCF|1|52|C|1248
6HCF|1|52|C|1249
6HCF|1|52|C|1250
6HCF|1|52|C|1251
6HCF|1|52|C|1252
6HCF|1|52|G|1271
6HCF|1|52|C|1272
6HCF|1|52|G|1273

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain C3

uL4

Chain E3

60S ribosomal protein L6

Chain F3

uL30

Chain b3

eL29