J3_6HCF_025

3D structure

PDB id

6HCF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCUCCCACC*GGGGGC*GGGC

Length

21 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HCF|1|52|G|1098
6HCF|1|52|C|1099
6HCF|1|52|U|1100
6HCF|1|52|C|1101
6HCF|1|52|U|1102
6HCF|1|52|C|1103
6HCF|1|52|C|1104
6HCF|1|52|C|1105
6HCF|1|52|A|1106
6HCF|1|52|C|1107
6HCF|1|52|C|1108
*
6HCF|1|52|G|1162
6HCF|1|52|G|1163
6HCF|1|52|G|1164
6HCF|1|52|G|1165
6HCF|1|52|G|1166
6HCF|1|52|C|1167
*
6HCF|1|52|G|1194
6HCF|1|52|G|1195
6HCF|1|52|G|1196
6HCF|1|52|C|1197

Current chains

Chain 52

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain S3

eL20